FastQCFastQC Report
Thu 21 Jul 2022
EGAF00005114033

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005114033
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57008262
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTGATATTCGTGTCGATCTGTGGCACAGTAGTACACGGCTGAGTCCTC928040.16279043904197607No Hit
CCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGATGAGCTGACCA783930.1375116469960091No Hit
CCAGCCTTGGGATTCCCAAGTGTTTTCATTCAGTGATCAGGACTGAACAC740800.12994607693881283No Hit
CCAGGCTTCACCAAGCCTCCCCCAGACTCCACCAGTTGCACCTCACACTG717510.12586070419056103No Hit
CCCAGCCTTGGGATTCCCAAGTGTTTTCATTCAGTGATCAGGACTGAACA650610.11412556306312233No Hit
CTCGGTTTTAAGGCTGTTCATTTGCAGATATGTCGTGTTGAGTGAATCAT638570.11201358848652498No Hit
CTCGGGGCTGCCCTTTGGCTTTGGAGATGGTTTTCTCGATGGGGGCTGGG598280.1049461918344397No Hit
GTCGGAGTCCAGCACGGGAGGCGTGGTCTTGTAGTTGTTCTCCGGCTGCC597000.10472166297579813No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)