FastQCFastQC Report
Tue 12 Jul 2022
EGAF00005114184

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005114184
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43623850
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG623680.14296766562327717No Hit
CCCGACGTTACTCGGACTACCCCGATGCATACACCACATGAAACATCCTA514030.11783233254286359No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC461700.10583660085022298No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)