FastQCFastQC Report
Sun 3 Jul 2022
EGAF00005114295

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005114295
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431366104
Sequences flagged as poor quality0
Sequence length15
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTCAAAAAAAAAA32817090.7607711801110827No Hit
TGCCTAAAAAAAAAA27273660.6322624737339121No Hit
GGTTCAAAAAAAAAA20622000.4780625971483378No Hit
TCTCGAAAAAAAAAA19340550.4483558123982778No Hit
ATGCCAAAAAAAAAA19092940.4426156766364749No Hit
CGTTGAAAAAAAAAA15113120.3503548345560318No Hit
CAATCAAAAAAAAAA13997740.3244979118711655No Hit
CACTCAAAAAAAAAA13153640.304929846782769No Hit
GCTTAAAAAAAAAAA12531060.29049709478332125No Hit
GCAACTAAAAAAAAA11401750.2643172445464097No Hit
GCAAAAAAAAAAAAA11175740.25907784353867547No Hit
GATCACAAAAAAAAA8467010.1962836189836557No Hit
TGCACAAAAAAAAAA8134650.18857879477706946No Hit
GGGGGGGGGGGGGGG8103870.18786524775252159No Hit
CAATCGAAAAAAAAA7905970.1832774973900128No Hit
GGCTAAAAAAAAAAA7882070.18272344365750168No Hit
TACCTAAAAAAAAAA7879590.18266595188944193No Hit
GATTCAAAAAAAAAA7488850.17360775291699787No Hit
GCTTAGAAAAAAAAA7329270.16990834309967015No Hit
TCTCTAAAAAAAAAA7052130.16348363801899465No Hit
AGCTCAAAAAAAAAA7018200.1626970671761451No Hit
CTTCGAAAAAAAAAA6944510.16098877347117657No Hit
ATACCAAAAAAAAAA6775520.15707121948552544No Hit
GAGTCAAAAAAAAAA6649860.1541581486894019No Hit
GGATCTAAAAAAAAA6044440.14012320263346423No Hit
GACTCTAAAAAAAAA5810280.1346948669847272No Hit
TAGACCAAAAAAAAA5807060.1346202204149077No Hit
TGGAGCAAAAAAAAA5473130.12687900020999332No Hit
CATTAAAAAAAAAAA5414720.12552492997919928No Hit
CGGATTAAAAAAAAA5228480.12120748365522943No Hit
TCTCAAAAAAAAAAA5189450.1203026837732248No Hit
TCACAAAAAAAAAAA5054610.11717680070662205No Hit
GCTCATAAAAAAAAA4924050.11415013730425143No Hit
TTGCAGAAAAAAAAA4740760.1099010783656752No Hit
GCTGACAAAAAAAAA4687290.10866152802770984No Hit
GGTCTTAAAAAAAAA4589460.10639361687074049No Hit
TTGCAAAAAAAAAAA4556440.10562814179762255No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)