FastQCFastQC Report
Mon 4 Jul 2022
EGAF00005114297

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005114297
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521015963
Sequences flagged as poor quality0
Sequence length15
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTCAAAAAAAAAA39060220.7496933448083241No Hit
GGGGGGGGGGGGGGG35703870.6852740133798934No Hit
TGCCTAAAAAAAAAA23397400.44907261315523267No Hit
ATGCCAAAAAAAAAA18840930.36161905465456917No Hit
CGTTGAAAAAAAAAA17139870.3289701509586953No Hit
TCTCGAAAAAAAAAA16851440.32343423612147565No Hit
GGTTCAAAAAAAAAA11185040.21467749156084875No Hit
TGCACAAAAAAAAAA8582300.16472240026165955No Hit
CGGATTAAAAAAAAA7150520.13724186028442278No Hit
AGCTCAAAAAAAAAA5941610.11403892436977021No Hit
GCAACTAAAAAAAAA5710800.10960892574418109No Hit
CTTCGAAAAAAAAAA5469890.10498507509260324No Hit
GCTTAAAAAAAAAAA5345030.10258860341290542No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)