FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005114299

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005114299
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences575188028
Sequences flagged as poor quality0
Sequence length15
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGG50835940.8838142924629857No Hit
CAGTCAAAAAAAAAA41307290.7181528124573553No Hit
CGTTGAAAAAAAAAA18656000.324346111042492No Hit
TGCCTAAAAAAAAAA16105730.280008088068203No Hit
TCTCGAAAAAAAAAA13160990.22881195990400555No Hit
ATGCCAAAAAAAAAA9752720.16955707569073394No Hit
CGGATTAAAAAAAAA8067890.14026526296197528No Hit
GGTTCAAAAAAAAAA7703980.13393846229358583No Hit
CAATCGAAAAAAAAA6065880.10545907954815778No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)