FastQCFastQC Report
Thu 21 Jul 2022
EGAF00005114413

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005114413
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91565853
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAGCCTTCTGCAAGATGCTTCTGATTCTGCTGTCAGTGGCCCTGCTGG3157280.34480976221561543No Hit
GTGACACCAGAGCCTTCTGCAAGATGCTTCTGATTCTGCTGTCAGTGGCC3137710.34267250259766596No Hit
CCAGAGCCTTCTGCAAGATGCTTCTGATTCTGCTGTCAGTGGCCCTGCTG2800920.30589132391962753No Hit
TGACACCAGAGCCTTCTGCAAGATGCTTCTGATTCTGCTGTCAGTGGCCC1467980.16031958988030176No Hit
CTTAGATGAAGATGTCAGCCAAGAAGACGTTCCCTTGGTAATATCAGATG1001980.10942725559494323No Hit
CAGCAATCTCAACCCTCTGCTGGTGATGGGAACCAGAATGATGGCCCTCA950090.10376029588235257No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)