FastQCFastQC Report
Thu 21 Jul 2022
EGAF00005114482

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005114482
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51301565
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTTCTTTCCAGGTGCTCCAACCCCAATTGCAGTTTGGGGGAACGTGTG604050.1177449459875152No Hit
GTCCTCACTGAGCGTGGCCGGGTCTGCTGGGCTGCTCTCCAGGGCAGACC564580.11005122358353006No Hit
CTCAAATGATCAGCACATTCAGAAGCAGGACAGAGGAGCTCTGATGACAT546400.10650747204300687No Hit
GGGAGGAGTTTAGTTGGCATTCTGGGGCATGCTAACATGAGGGCGATGGT520750.10150762457246676No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)