FastQCFastQC Report
Fri 3 May 2024
EGAF00005114495

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005114495
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55485628
Total Bases5.6 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCTATAGTGTAGATCTC2989130.5387214865802726Illumina Single End PCR Primer 1 (96% over 33bp)

[OK]Adapter Content

Adapter graph