FastQCFastQC Report
Tue 12 Jul 2022
EGAF00005114549

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005114549
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59721290
Sequences flagged as poor quality0
Sequence length101
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT973130.16294524113595No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCTTCGCCTGTGTAGATCTC891980.1493571220581471Illumina Single End PCR Primer 1 (96% over 31bp)
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG642000.1074993524084962No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)