FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005115273

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005115273
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51467816
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTGATATCGAATTCCTGCAGCCCGGGGGATCCACTAGTTCTAGAGCGG16231463.1537106606583034No Hit
CAGGAATTCCTTCGCTATTACGCCAGCTGGCGAAAGGGGGATGTGCTGCA13146662.5543458070962246No Hit
AGGAATTCCTTCGCTATTACGCCAGCTGGCGAAAGGGGGATGTGCTGCAA2740250.5324201050225251No Hit
CTTGATATCGAATTCCTGCAGCCCGGGGGATCCACTAGTTCTAGAGCGGC1074470.20876541565315304No Hit
GGAATTCCTTCGCTATTACGCCAGCTGGCGAAAGGGGGATGTGCTGCAAG619580.12038202670189076No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)