FastQCFastQC Report
Thu 12 May 2022
EGAF00005115274

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005115274
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51467816
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTGATATCGAATTCCTGCAGCCCGGGGGATCCACTAGTTCTAGAGCGG15273292.9675418906448257No Hit
CAGGAATTCCTTCGCTATTACGCCAGCTGGCGAAAGGGGGATGTGCTGCA13084572.542281957330383No Hit
AGGAATTCCTTCGCTATTACGCCAGCTGGCGAAAGGGGGATGTGCTGCAA2829210.5497046931231743No Hit
CTTGATATCGAATTCCTGCAGCCCGGGGGATCCACTAGTTCTAGAGCGGC1035310.2011567772761137No Hit
GGAATTCCTTCGCTATTACGCCAGCTGGCGAAAGGGGGATGTGCTGCAAG623130.12107177813801154No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN602290.11702264576371377No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)