FastQCFastQC Report
Tue 28 Jun 2022
EGAF00005179218

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179218
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences104428063
Sequences flagged as poor quality0
Sequence length126
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCTCGTATGC10102020.9673664060971809TruSeq Adapter, Index 10 (100% over 50bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2003500.1918545592481209No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)