FastQCFastQC Report
Tue 28 Jun 2022
EGAF00005179296

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179296
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences95333762
Sequences flagged as poor quality0
Sequence length126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATGC24347622.5539346700699803TruSeq Adapter, Index 9 (100% over 50bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10472031.0984597460865961No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2136530.22411053074775336No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)