FastQCFastQC Report
Tue 31 May 2022
EGAF00005179309

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179309
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences88705294
Sequences flagged as poor quality0
Sequence length126
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG3084250.347696271656571Illumina Single End PCR Primer 1 (100% over 50bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1493610.16837890194017058No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)