FastQCFastQC Report
Mon 4 Jul 2022
EGAF00005179390

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179390
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences105098316
Sequences flagged as poor quality0
Sequence length126
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGC45452504.32476006561323TruSeq Adapter, Index 3 (100% over 50bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11343941.079364582777901No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1520870.1447092644186611No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)