FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005179446

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179446
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60695884
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGACGCCC1988312332.75860188476701No Hit
CTGACTGA1485343924.471904882380493No Hit
ACCGTATG1398794223.04594822278229No Hit
GATTAGAT1093100418.00946502402041No Hit
TGCCGCCC1665990.27448154474527464No Hit
TGACGCCA917670.15119147123716No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)