FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179447

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179447
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21722071
Sequences flagged as poor quality0
Sequence length8
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGGTGC724704233.36257394610302No Hit
GCGATGTG575458226.4918662681841No Hit
TTTCCACT462851521.307890025771485No Hit
AGATACAA289447413.325037009592686No Hit
CCCGGTGC1526080.7025481133912139No Hit
TTTCCCCT843020.38809375036109584No Hit
CACGGTGA602420.27733083093228084No Hit
CACGGTTC365330.16818377953004573No Hit
AGCTACAA335580.15448803201131237No Hit
AACGGTGC323000.14869668734624797No Hit
TTTCCACA303190.1395769307631855No Hit
GCGATGTT277910.12793899808172066No Hit
GCGAGGTG269830.1242192790917588No Hit
CACGTTGC269280.12396608039813514No Hit
GCGATGTA247960.11415117831076052No Hit
CAAGGTGC245800.1131567979867113No Hit
GCGCTGTG229580.10568973833111953No Hit
TTTACACT220210.10137615331429495No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)