FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005179448

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179448
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54403814
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTATG1521054927.958607828487906No Hit
ACCACGAA1500240827.576022519303518No Hit
CAATACCC1498499127.54400821971783No Hit
GTGGGTGT866509015.92735759298052No Hit
CAATACCA656390.12065146756071184No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)