FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179449

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179449
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61009137
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGACGCCC2002391732.82117726071097No Hit
CTGACTGA1493252324.475879735850057No Hit
ACCGTATG1406487323.053715708189742No Hit
GATTAGAT1098123517.999328526807385No Hit
TGCCGCCC1490130.24424702155678746No Hit
TGACGCCA909420.1490629182314118No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)