FastQCFastQC Report
Wed 10 Jul 2024
EGAF00005179453

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179453
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21447882
Total Bases171.5 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGGTGC720522933.59412831532736No Hit
GCGATGTG570182326.58455039989496No Hit
TTTCCACT459790721.437580643160942No Hit
AGATACAA287924813.424393140544133No Hit
CCCGGTGC1340830.6251572999142759No Hit
TTTCCCCT766940.3575830937525673No Hit
CACGGTGA561930.2619978979742615No Hit
CACGGTTC349640.1630184276470749No Hit
AGCTACAA300970.14032621029899361No Hit
TTTCCACA297470.1386943475351086No Hit
AACGGTGC284760.1327683544696861No Hit
GCGATGTT253680.11827741312638701No Hit
GCGATGTA246900.11511626182948974No Hit
CACGTTGC246720.11503233745877564No Hit
CAAGGTGC223340.10413149419602363No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)