FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005179454

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179454
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26300783
Sequences flagged as poor quality0
Sequence length8
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGGTGC901221534.26595702492964No Hit
GCGATGTG709824926.98873641898798No Hit
TTTCCACT567240521.567437745104396No Hit
AGATACAA354437113.476294603092235No Hit
CCCGGTGC1169390.4446217437708984No Hit
TTTCCCCT677600.2576349152798987No Hit
CACGGTGA499610.189960124000871No Hit
GCGATGTA303570.11542241917284364No Hit
TTTCCACA301770.11473802890202926No Hit
CACGGTTC293810.11171150303776127No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)