FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179457

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179457
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25144820
Sequences flagged as poor quality0
Sequence length8
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGGTGC861946834.27929887746263No Hit
GCGATGTG678533526.98502116937007No Hit
TTTCCACT543442621.612507069050405No Hit
AGATACAA340233113.530941959417486No Hit
CCCGGTGC1064430.4233197931025157No Hit
TTTCCCCT653580.25992629893552627No Hit
CACGGTGA498740.19834701540913796No Hit
TTTCCACA297880.11846575159416531No Hit
GCGATGTA292620.1163738694490555No Hit
CACGGTTC288840.11487057771739864No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)