FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179459

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179459
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37037083
Sequences flagged as poor quality0
Sequence length26
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGACCT344100.019.3029861
CGGACTG262100.019.2317331
GCGCAGT328450.019.147641
CAGTCGG413700.018.9945076
TCTGGGC395950.018.9670058
CGCAGTC289900.018.890132
GGACCTA326500.018.8676242
TGGGCCA397950.018.83134810
AGGATTG315750.018.7994969
TCGGATC439000.018.7948029
CCTAGAG315300.018.778835
GACCTAG333400.018.7307643
ACCTAGA314200.018.7299464
CACGAGG189100.018.714938
CGGATCC440600.018.70387810
GACCTGG274650.018.6953121
AAGGCAG302600.018.6841931
CGCCGAG134350.018.6685072
CTCGAAA226200.018.6621191
CATGGCG188500.018.6585791
Produced by FastQC (version 0.11.5)