FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179461

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179461
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37849324
Sequences flagged as poor quality0
Sequence length26
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGACCT345300.019.3601761
CGGACTG268900.019.2390291
GCGCAGT342200.019.1233311
CAGTCGG427750.018.9430856
TCTGGGC398150.018.9261028
GGACCTA329350.018.9149722
CCTAGAG315400.018.8955525
AGGATTG324400.018.8333669
TGGGCCA399500.018.83005710
CGCAGTC302700.018.8291722
CGCCGAG136250.018.7835982
GACCTAG335150.018.7815973
AGGCTAG309450.018.7576628
GACCTGG277050.018.7561281
ACCTAGA315550.018.750164
TCGGATC456800.018.7135779
CGGATCC457500.018.67006110
CACCGAA229100.018.6629188
CGGTGCG162550.018.6609576
TTGAACG243250.018.6601581
Produced by FastQC (version 0.11.5)