FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179466

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179466
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40332865
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGTACAC1146157328.41745311174894No Hit
ATTGCGTG1110989227.545506623444677No Hit
CGACTTGA872486621.6321503567872No Hit
TACAGACT757881018.79065620555346No Hit
CGCCTTGA1364040.338195662519883No Hit
TACAGCCT1238170.3069878621317875No Hit
GCGTACCC880370.2182760882471404No Hit
GCGTACAA754900.18716746256433806No Hit
CGACTTGC529540.1312924336022249No Hit
CGACTTAA470750.11671623129177658No Hit
GCGTCCAC408950.10139373932399794No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)