FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179467

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179467
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38141144
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCGGTC1109601929.09199315049386No Hit
CCTGAAGG903244823.681638914658667No Hit
AAGATCAT889343723.317174230536978No Hit
TGATCTCA859411722.532404901122003No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)