FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179469

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179469
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37910025
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCGGTC1106849029.196736219509216No Hit
CCTGAAGG898699023.70610412417296No Hit
AAGATCAT885732923.364081136849684No Hit
TGATCTCA854894822.550626120663335No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)