FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005179470

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179470
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38700541
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCGGTC1131872229.246934816751015No Hit
CCTGAAGG917690723.71260649818823No Hit
AAGATCAT905699523.40276070042535No Hit
TGATCTCA873484622.570345980434745No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)