FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005179474

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179474
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27391782
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCATTCC779672928.463752376533957No Hit
TTGCCGGA682804324.9273413463936No Hit
AGTTGCAG562708420.54296430951444No Hit
CAAGAATT557422620.34999402375501No Hit
GCCATTCA1948980.711519973399321No Hit
GCCATTAC898790.32812396068280625No Hit
AAAGAATT630930.2303355071970126No Hit
TTGCCGGC554200.20232345599128965No Hit
GACATTCC499390.18231380492149069No Hit
GCAATTCC495560.1809155753356974No Hit
TTGACGGA474090.17307745804927915No Hit
GCCCTTCC471240.17203700000240948No Hit
TTGCCTGA433970.15843072933334532No Hit
GCCATACC373690.13642412895955436No Hit
CAAGAATA372770.13608826180056485No Hit
AGTTGAAG370380.13521573733318992No Hit
TTGCCGAA355510.12978710183952252No Hit
TTGCAGGA329530.12030250532805789No Hit
CAATAATT313410.11441752858576343No Hit
CAAGAAAT296350.10818938322450142No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)