FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179484

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179484
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30893906
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCTTCT849538827.498588232902634No Hit
CGAGGCTC810571226.237252097549597No Hit
AAGACGGA751454224.323703192467796No Hit
TCTTAAAG639766220.7084918300716No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)