FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179485

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179485
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36072511
Sequences flagged as poor quality0
Sequence length26
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGCGAT133650.017.9020461
CAATGGA173100.017.6944948
CGCTATC179900.017.458581
CTGCGGA112400.017.415461
TGCTACC159450.017.4142741
AGGCGAC106850.017.397758
ATCGAGT149700.017.385851
CGGACTG97100.017.3473571
AGGGTGA164950.017.1732061
TACCTTA195300.017.1677041
CATGGCG185500.017.1472171
CGGCTAG183600.017.1121941
TGGCGGT133050.017.099323
TGACTAG121500.017.0825331
ATAACGC132400.017.0360551
CCGGGAT95300.016.9822831
ATGGCGG135100.016.9731162
CTGCCTA136800.016.9487551
GTAACTG143850.016.91081
CTCGAAA103800.016.8250871
Produced by FastQC (version 0.11.5)