FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179506

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179506
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39620791
Sequences flagged as poor quality0
Sequence length26
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGACCT351550.019.3320621
CGGACTG299850.019.2963451
GCGCAGT350100.019.0464531
TCTGGGC422650.018.9674158
GGACCTA331800.018.9446742
CAGTCGG445200.018.9199736
CACGAGG210800.018.8415138
TGGGCCA425900.018.80441510
AGGATTG331350.018.7860289
CGCAGTC309900.018.7859972
CGCCGAG148650.018.7848932
CACCGAC212650.018.77216310
GACCTAG339500.018.7329983
CCTAGAG317550.018.7303185
TCGGATC472850.018.7282339
TTGAACG262000.018.7246421
GACCTGG294400.018.7226961
AGTGTAC217300.018.7150758
AAGGCAG342250.018.7059671
CACCGAA243200.018.7037858
Produced by FastQC (version 0.11.5)