FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179508

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179508
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37797017
Sequences flagged as poor quality0
Sequence length26
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGACCT345700.019.347281
CGGACTG272650.019.2813681
GCGCAGT337500.019.1120191
TCTGGGC403200.018.964058
CAGTCGG419100.018.9402646
GGACCTA327350.018.9278072
GACCTAG332700.018.8387533
AGGATTG324850.018.8248489
CGCAGTC301350.018.7921542
CCTAGAG316650.018.7679395
TGGGCCA407300.018.74619510
TCGGATC445600.018.7350649
TTGAACG245700.018.7339531
GGCAGAG201250.018.7269133
ACCTAGA317100.018.7255124
AGGCTAG314750.018.714018
CACCGAA231550.018.709458
AGGTGGG228450.018.700688
AACAGGA286350.018.6935886
CGCCGAG137650.018.6923892
Produced by FastQC (version 0.11.5)