FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179550

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179550
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28182969
Sequences flagged as poor quality0
Sequence length26
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAATGAA164750.017.974831
TGCCAAA139750.017.7194671
CGGCTAG125700.017.6234231
GACTAAC93650.017.4286671
AAACCTG111150.017.4019851
GGGACCT76550.017.3632741
CAATGGA96650.017.2888898
CCGGTAG75900.017.2879661
TACGGAT107450.017.2659031
TATGCCC102400.017.1211831
ACTGAAC83100.017.0417441
AGAAACC90550.016.863328
CTTAACT105350.016.822131
AGACGTT86650.016.71291
GGGAATG91300.016.6942161
GATGCTA88600.016.6837061
ACGGAGA120250.016.6672691
GATCGCG75900.016.6554781
ATGGGAG107900.016.6099511
ACTTGAC76800.016.58825710
Produced by FastQC (version 0.11.5)