FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179562

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179562
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26814518
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGAGCCG130200.018.3509581
CGGACGT131850.018.265431
TGATCCT91400.018.2048782
ATCCTCT125750.018.1623484
CCCATAC164150.018.1563661
TTGGCAA224200.018.0664561
GTCGACT121900.017.9088278
GATCCTC93050.017.8820613
CATGGCG109850.017.8265021
CGCTATC107900.017.7871781
AGCCTAA133850.017.775821
CCTATTA128900.017.76791
GCCGACA115950.017.644753
GTAACTG131400.017.612521
ATAACGC113100.017.5883751
CATGACA137750.017.5847451
CCACTAC109500.017.5729431
GGCTCGA94350.017.5114331
ATCGAGT99600.017.5021571
TATGCCC122100.017.4960141
Produced by FastQC (version 0.11.5)