FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179564

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179564
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26872896
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGACGT127350.018.339181
TGAGCCG136400.018.2736641
CCCATAC162850.018.1985111
TTGGCAA223500.018.1022681
GTCGACT118700.018.085868
ATCCTCT125150.018.0138684
CGCTATC108500.017.837881
CATGGCG112950.017.7638321
TGATCCT91850.017.7060972
GCCGACA111700.017.7025153
GATCCTC92200.017.649733
CAGCCGA151900.017.5613231
AGCCTAA133450.017.5608561
CCACTAC108250.017.555681
CCTATTA127150.017.5499231
CATGACA135750.017.4622611
CAATGGA99000.017.452858
GTAACTG130950.017.4378281
TATGCCC120200.017.4246561
AGGGTGA107500.017.4083391
Produced by FastQC (version 0.11.5)