FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005179574

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179574
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33613476
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTGTGGC970910028.884546186178422No Hit
TACCACCA832092124.754717423452426No Hit
GGGTCAAG784407223.33609294081933No Hit
CTAAGTTT683533420.335100124723787No Hit
TCCCACCA1360010.40460260640702556No Hit
TACCCCCA1237400.368126164637064No Hit
ACGGTGGC563600.16767084725185816No Hit
GGGTCCAG395040.11752429293536915No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)