FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179576

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179576
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19917317
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCTAAC565768528.405859082325197No Hit
CGGTCCCA488361324.519432009843495No Hit
ACAGAGGT479021224.05048832631423No Hit
TATAGTTG406467420.407738652751274No Hit
CGGTCCCC622700.31264251103700363No Hit
GTCCTACC371690.1866165006059802No Hit
GGCCTAAC230830.11589412369145904No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)