FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179596

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179596
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences73198478
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAGTTCT1948245326.615926358468823No Hit
CTTTGCGG1860587525.41839052992331No Hit
TGCACAAA1729995623.634311084992778No Hit
AAGCAGTC1678211422.926861949233427No Hit
CTTTGCGA886880.1211609891670152No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)