FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179598

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179598
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19463932
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCTAAC552515028.38660759809477No Hit
CGGTCCCA474237524.36493818412436No Hit
ACAGAGGT467595224.023676202732318No Hit
TATAGTTG399263620.51299809308828No Hit
CGGTCCCC636650.3270921826072964No Hit
GTCCTACC317120.16292699748437264No Hit
GGCCTAAC246480.126634227863106No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)