FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005179599

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179599
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51501208
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGATGGG1425612627.681148760627128No Hit
GTCTCCTT1415739627.48944451943729No Hit
TCACATCA1092274921.208723880806836Illumina PCR Primer Index 1 (100% over 8bp)
AGTGGAAC1073899320.851924483014066No Hit
AGTGGCAC2074100.4027284175547883No Hit
TCACCTCA997890.19376050363711858RNA PCR Primer, Index 40 (100% over 8bp)
TCCCATCA793430.15406046397979636No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)