FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005179602

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179602
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36493311
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCCTCAT1093318229.959413658026264No Hit
CCAGGGCA1021533727.992354544097136No Hit
AATAATGG762437120.89251643951956No Hit
GTGTCATC596490816.34520912613273No Hit
GTGTCATA1295650.35503766703985834No Hit
CCAGGGAA902580.24732751708936468No Hit
CCAGGGCC853840.23397164483102123No Hit
TGCCTAAT782530.21443107751993234No Hit
TGACTCAT765350.20972336546826348No Hit
CCCGGGCA711680.19501656070615242No Hit
AATAATGA706900.19370673162542035No Hit
TGCCTCAG521310.1428508364176657No Hit
TGCCTCAA487950.1337094351345648No Hit
GTGTCCTC440680.1207563764219695No Hit
CAAGGGCA407050.11154098897740465No Hit
TGCCTCCT392970.10768274766846998No Hit
GTGTAATC386710.10596736481378738No Hit
AATAATGT380200.10418347625404556No Hit
ACAGGGCA366540.10044032452961038No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)