FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179603

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179603
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37310936
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCCTCAT1127952230.23114188290532No Hit
CCAGGGCA1056197628.307989914806747No Hit
AATAATGG781743320.95212245546453No Hit
GTGTCATC617088416.539075835567353No Hit
GTGTCATA1139160.30531531023504743No Hit
CCAGGGAA748550.20062482485027983No Hit
AATAATGA719000.19270489488658232No Hit
TGACTCAT650730.17440731050006356No Hit
TGCCTAAT633480.16978400113039244No Hit
CCAGGGCC632380.16948918140247138No Hit
CCCGGGCA527970.14150542886407352No Hit
TGCCTCAA471080.12625788857186537No Hit
TGCCTCAG392950.10531764735143606No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)