FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005179611

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179611
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30877656
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCTCTC1059094634.29970850118934No Hit
TTCGCTGA788583525.538969020187285No Hit
ACAAGAAT581296218.82578781239094No Hit
CATTAGCG560867918.164199380937465No Hit
TTCGCTGC904710.29299827681220364No Hit
GGGCTCTA621500.20127823174142492No Hit
GGGCTATC404550.13101706943039976No Hit
GGGCTCGC333120.10788383677828395No Hit
GGGCGCTC321150.10400724718223431No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)