FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005179619

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179619
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32328541
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCTCTC1108449034.28700973545327No Hit
TTCGCTGA826878525.577352841255657No Hit
ACAAGAAT605799318.738838229662143No Hit
CATTAGCG586859818.15299366587561No Hit
TTCGCTGC883590.27331576763702387No Hit
GGGCTCTA614410.19005188016372282No Hit
GGGCTATC407870.1261640604195531No Hit
GGGCTCGC377970.116915266915386No Hit
GGGCGCTC370330.1145520300467627No Hit
TTCGCGGA336570.10410924514038539No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)