FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179627

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179627
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences126150281
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACTCGC3372574526.73457778504671No Hit
CATGAACA3301241026.169113329204553No Hit
AGCTGGAT2894816822.947367037573226No Hit
GTGACTTG2856904322.646832629726763No Hit
TCACTCGA1715880.13601872198762682RNA PCR Primer, Index 47 (100% over 8bp)
GTGACTTA1385650.10984121390898843No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)