FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179629

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179629
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32528276
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGTCAC887767627.29218111651537No Hit
GATCAGCA792952924.377341731852002No Hit
TGGTGTTT774518823.810631710085094No Hit
ACAACAGG668082320.5385093264703No Hit
TGGTGTTA1206680.3709634042701802No Hit
CTCGTCCC684860.21054297497967614No Hit
CTCGTCAA675390.2076316617579118No Hit
CTAGTCAC576560.17724886495675332No Hit
ACACCAGG566530.1741653938253598No Hit
GATCAGAA560670.17236388427102622No Hit
GCTCAGCA522440.1606110326904506No Hit
CCAACAGG496420.15261183838946768No Hit
GATCCGCA385850.11861987398286955No Hit
CTCGTAAC364530.11206557642341698No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)