FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005179631

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179631
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30638190
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGTCAC826650026.981032495718576No Hit
GATCAGCA734217723.964134304278417No Hit
TGGTGTTT723006823.598221696516667No Hit
ACAACAGG617226020.14564176278037No Hit
TGGTGTTA1142280.3728288126681113No Hit
CTCGTCCC1003170.3274246944744451No Hit
CTCGTCAA821830.2682371249737664No Hit
ACACCAGG773010.2523027633159792No Hit
GCTCAGCA709550.23159005150108408No Hit
CCAACAGG701150.22884837518143206No Hit
GATCAGAA699270.2282347619098909No Hit
CTAGTCAC695150.2268900349531092No Hit
GATCCGCA579140.18902552663848615No Hit
CTCGTAAC479140.1563865228331047No Hit
GATCAGCC394050.1286139944951056No Hit
TGGTGGTT347210.11332588511266495No Hit
ACCACAGG337110.11002934572832142No Hit
TGGGGTTT321040.10478425781679662No Hit
GATAAGCA319420.10425550595514943No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)