FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005179632

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179632
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29532172
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGTCAC796032526.954756324729516No Hit
GATCAGCA710346524.05331040331202No Hit
TGGTGTTT696432023.582146277625636No Hit
ACAACAGG597657320.23749895537653No Hit
TGGTGTTA1102330.3732641134556578No Hit
CTCGTCCC925520.3133938133639476No Hit
ACACCAGG748850.25357091919957664No Hit
CTCGTCAA744760.25218598889373933No Hit
GCTCAGCA679830.2301997970213637No Hit
CTAGTCAC660780.22374920476556892No Hit
GATCAGAA644780.21833138449823467No Hit
CCAACAGG624150.2113457824910406No Hit
GATCCGCA539940.18283111719652723No Hit
CTCGTAAC428470.14508584062154317No Hit
GATCAGCC377720.12790119196109245No Hit
TGGTGGTT331010.11208454291814364No Hit
ACCACAGG328000.11106531548035141No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)