FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005179636

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005179636
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30473107
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAGTCGC1108042936.36133657129219No Hit
TATCGATA727978023.889195151646337No Hit
GTGTCGCT618822520.30716789069129No Hit
CCCAATAG474861115.582956473719598No Hit
AGCGTCGC1052120.3452618074028356No Hit
AGAGTCGA593870.1948833113735334No Hit
AGAGTCTC556250.18253799981734714No Hit
AGAGTAGC484370.1589499882634219No Hit
TATCTATA359520.11797943675385643No Hit
TATCGAAA348500.11436313336871098No Hit
GTGTCGCG341900.11219728923604672No Hit
CCAAATAG330830.10856457794080532No Hit
CCCAATAT312760.10263475923213213No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)